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The 3′ end of the mapped read is defined Since our Pindel is able to identify deletions of size up to 10 kb from 36 bp paired-end Recommend to your Library;

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3. Download DNAseq library from SRA. Link to bowtie2 manual. Bowtie2 PE reads mapping. Mapping parameters for bowtie2 with paired end reads:-p 9 :

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We present a pipeline to perform integrative analysis of mate-pair (MP) and paired-end (PE) genomic DNA sequencing data. Our pipeline detects structural variations

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